Publications

Modified

November 22, 2022

* Indicates co-first author.

                 
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Armour CR, Sovacool KL, Close WL, Topçuoğlu BD, Wiens J, Schloss PD. Sep 2022. Streamlined implementation of a machine learning model to classify screen relevant neoplasia using reference-based OTU clustering. bioRxiv. 10.1101/2022.09.01.506299      
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Barron MR, Sovacool KL, Abernathy-Close L, Vendrov KC, Standke AK, Bergin IL, Schloss PD, Young VB. Jul 2022. Intestinal Inflammation Reversibly Alters the Microbiota to Drive Susceptibility to Clostridioides Difficile Colonization in a Mouse Model of Colitis. mBio. 10.1128/mbio.01904-22      
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Sovacool KL, Westcott SL, Mumphrey MB, Dotson GA, Schloss PD. Feb 2022. OptiFit: An Improved Method for Fitting Amplicon Sequences to Existing OTUs. mSphere. 10.1128/msphere.00916-21      
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*Lapp Z, *Sovacool KL, Lesniak N, King D, Barnier C, Flickinger M, Krüger J, Armour CR, Lapp MM, Tallant J, Diao R, Oneka M, Tomkovich S, Anderson JM, Lucas SK, Schloss PD. Jan 2022. Developing and Deploying an Integrated Workshop Curriculum Teaching Computational Skills for Reproducible Research. JOSE. 10.21105/jose.00144      
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*Duda M, *Sovacool KL, Farzaneh N, Nguyen VK, Haynes SE, Falk H, Furman KL, Walker LA, Diao R, Oneka M, Drotos AC, Woloshin A, Dotson GA, Kriebel A, Meng L, Thiede SN, Lapp Z, Wolford BN. Dec 2021. Teaching Python for Data Science: Collaborative Development of a Modular & Interactive Curriculum. JOSE. 10.21105/jose.00138      
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*Topçuoğlu BD, *Lapp Z, *Sovacool KL, Snitkin E, Wiens J, Schloss PD. May 2021. Mikropml: User-Friendly R Package for Supervised Machine Learning Pipelines. JOSS. 10.21105/joss.03073      
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Everson KM, Gray LN, Jones AG, Lawrence NM, Foley ME, Sovacool KL, Kratovil JD, Hotaling S, Hime PM, Storfer A, Parra-Olea G, Percino-Daniel R, Aguilar-Miguel X, O’Neill EM, Zambrano L, Shaffer HB, Weisrock DW. Apr 2021. Geography Is More Important than Life History in the Recent Diversification of the Tiger Salamander Complex. PNAS. 10.1073/pnas.2014719118      
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Hagan AK, Lesniak NA, Balunas MJ, Bishop L, Close WL, Doherty MD, Elmore AG, Flynn KJ, Hannigan GD, Koumpouras CC, Jenior ML, Kozik AJ, McBride K, Rifkin SB, Stough J, Sovacool KL, Sze MA, Tomkovich S, Topcuoglu BD, Schloss PD. Aug 2020. Ten Simple Rules to Increase Computational Skills among Biologists with Code Clubs. PLOS Computational Biology. 10.1371/journal.pcbi.1008119      
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Goodin MM, Farman M, Inocencio H, Jang C, Jaromczyk JW, Moore N, Sovacool KL. Aug 2016. Processing RNA-Seq Data of Plants Infected with Coffee Ringspot Virus. BMC Bioinformatics. 10.1186/s12859-016-1154-y      

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